Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs72648409 chr8:53857307 T/C 0.000484 171 24.7 27.2 6.1 KM Plot
PCPG rs7265464 chr20:5988364 A/G 0 176 25.53 23.53 2.93 KM Plot
PCPG rs72661636 chr1:36426483 T/C 0.000208 175 25.53 24.7 10.3 KM Plot
PCPG rs72666980 chr13:114152274 C/A 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs72676978 chr4:110976320 T/C 0 177 26.57 18 2.93 KM Plot
PCPG rs72683290 chr8:140984225 C/A 0 177 25.4 23.43 3.17 KM Plot
PCPG rs72713784 chr15:43115936 A/G 2.3E-14 177 25.47 24.85 3.17 KM Plot
PCPG rs72713795 chr15:43141628 T/A 2.65E-14 176 25.53 24.85 3.17 KM Plot
PCPG rs72719486 chr15:43189471 C/T 2.58E-14 175 25.87 24.62 3.17 KM Plot
PCPG rs72721511 chr15:43286359 T/C 2.58E-14 176 25.87 24.03 3.17 KM Plot
PCPG rs72723734 chr14:74311301 A/T 5.67E-6 170 25.47 28.3 10.57 KM Plot
PCPG rs72723761 chr14:74374802 G/A 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs72723776 chr14:74433141 T/C 9.42E-6 177 25.28 30.33 7.4 KM Plot
PCPG rs72725943 chr14:74554677 A/C 2.24E-5 176 25.4 27.43 10.3 KM Plot
PCPG rs72725948 chr14:74563289 G/A 2.24E-5 176 25.4 27.43 10.3 KM Plot